AmiGO 2 AmiGO 2 is a project to create the next generation of AmiGO--the current official web-based set of tools for searching and browsing the Gene Ontology database
Assembly Converter Map (liftover) your data's coordinates to the current assembly.
BioGPS BioGPS is a gene portal built with two guiding principles in mind -- customizability and extensibility
Biolinks A subdivision of This site contains a comprehensive list of genetic related database links.
BioMart Use this data-mining tool to export custom datasets from Ensembl.
BLAST/BLAT Search our genomes for your DNA or protein sequence.
Data Slicer Get a subset of data from a BAM or VCF file.
DECIPHER DECIPHER (DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources) is an interactive web-based database which incorporates a suite of tools designed to aid the interpretation of genomic variants
Ensembl DNA sequences and assemblies 
File Chameleon Convert Ensembl files for use with other analysis tools
Gene Wiki Describe the relationships and functions of all human genes.
GTR® Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers
HGNC Gene nomenclature
ID History Converter Convert a set of Ensembl IDs from a previous release into their current equivalents.
Linkage Disequilibrium Calculator Calculate LD between variants using genotypes from a selected population.
Monarch An integrative data and analytic platform connecting phenotypes to genotypes across species, bridging basic and applied research with semantics-based analysis
NDEx query Examine gene(s) for their properties, relevant pathways (curated and experimentally derived), protein interactions (PPI network), gene associations (including drugs, disease and gene association networks), pathway figures (node only networks) and INDRAgo (machine curated pathways)
OMIM OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes
Post-GWAS Upload GWAS summary statistics and highlight likely causal gene candidates.
TiGER Genes
Variant Effect Predictor Analyse your own variants and predict the functional consequences of known and unknown variants via our Variant Effect Predictor (VEP) tool.
Variant Recoder Translate a variant identifier, HGVS notation or genomic SPDI notation to all possible variant IDs, HGVS, VCF format and genomic SPDI.
VCF to PED converter Parse a vcf file to create a linkage pedigree file (ped) and a marker information file, which together may be loaded into ld visualization tools like Haploview.
WikiProfessional Gene Wiki



Gene Disease Database A database of diseased genes



CTD (Comparative Toxicogenomics Database) Describes chemical-gene-disease interactions



Biolinks A subdivision of This site contains a comprehensive list of genetic related database links.



HGNC a resource for approved human gene nomenclature
International Human Epigenome Consortium Integrates epigenomic reference data from well-known national endeavors such as the Canadian CEEHRC, European Blueprint, European Genome-phenome Archive (EGA), US ENCODE and NIH Roadmap, German DEEP, Japanese CREST, Korean KNIH, Singapore's GIS and China's EpiHK



GeneCards A database of human genes, proteins and diseases



EPD Eukaryotic Promoter Database A database of eukaroytic promoters



Housekeeping and Reference Transcript Atlas (HRT Atlas) Web-based tool for searching cell specific candidate reference genes/transcripts suitable for qPCR experiment normalization. HRT Atlas also describes a complete list of human and mouse housekeeping genes and transcripts