GENES
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AmiGO 2 |
AmiGO 2 is a project to create the next generation of AmiGO--the current official web-based set of tools for searching and browsing the Gene Ontology database |
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Assembly Converter |
Map (liftover) your data's coordinates to the current assembly. |
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BioGPS |
BioGPS is a gene portal built with two guiding principles in mind -- customizability and extensibility |
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Biolinks |
A subdivision of www.bioplanet.com. This site contains a comprehensive list of genetic related database links. |
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BioMart |
Use this data-mining tool to export custom datasets from Ensembl. |
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BLAST/BLAT |
Search our genomes for your DNA or protein sequence. |
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Data Slicer |
Get a subset of data from a BAM or VCF file. |
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DECIPHER |
DECIPHER (DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources) is an interactive web-based database which incorporates a suite of tools designed to aid the interpretation of genomic variants |
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Ensembl |
DNA sequences and assemblies |
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File Chameleon |
Convert Ensembl files for use with other analysis tools |
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Gene Wiki |
Describe the relationships and functions of all human genes. |
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GTR® |
Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers |
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HGNC |
Gene nomenclature |
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ID History Converter |
Convert a set of Ensembl IDs from a previous release into their current equivalents. |
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Linkage Disequilibrium Calculator |
Calculate LD between variants using genotypes from a selected population. |
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Monarch |
An integrative data and analytic platform connecting phenotypes to genotypes across species, bridging basic and applied research with semantics-based analysis |
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NDEx query |
Examine gene(s) for their properties, relevant pathways (curated and experimentally derived), protein interactions (PPI network), gene associations (including drugs, disease and gene association networks), pathway figures (node only networks) and INDRAgo (machine curated pathways) |
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OMIM |
OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes |
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Post-GWAS |
Upload GWAS summary statistics and highlight likely causal gene candidates. |
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TiGER |
Genes |
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Variant Effect Predictor |
Analyse your own variants and predict the functional consequences of known and unknown variants via our Variant Effect Predictor (VEP) tool. |
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Variant Recoder |
Translate a variant identifier, HGVS notation or genomic SPDI notation to all possible variant IDs, HGVS, VCF format and genomic SPDI. |
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VCF to PED converter |
Parse a vcf file to create a linkage pedigree file (ped) and a marker information file, which together may be loaded into ld visualization tools like Haploview. |
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WikiProfessional |
Gene Wiki |
