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ANTIMICROBIAL RESISTANCE
CIPARS Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS)
AMRFinderPlus Bacterial resistance mechanisms
Antimicrobial Drug Database (AMDD) Bacterial resistance mechanisms
ARDB (no longer maintained) Bacterial resistance mechanisms
ARGminer Bacterial resistance mechanisms
BacMet Bacterial resistance mechanisms
Beta-Lactamase Database (BLAD) Bacterial resistance mechanisms
Beta-Lactamase Database (BLDB) Bacterial resistance mechanisms
CBMAR Bacterial resistance mechanisms
The Comprehensive Antibiotic Resistance Database Bacterial resistance mechanisms
FARME Bacterial resistance mechanisms
INTEGRALL Bacterial resistance mechanisms
LacED Bacterial resistance mechanisms
MEGARes Bacterial resistance mechanisms
MUBII-TB-DB Bacterial resistance mechanisms
Mustard Database Bacterial resistance mechanisms
MvirDB Bacterial resistance mechanisms
PathoPhenoDB Bacterial resistance mechanisms
PATRIC database Bacterial resistance mechanisms
RAC: Repository of Antibiotic resistance Cassettes Bacterial resistance mechanisms
ResFinder Bacterial resistance mechanisms
TBDReaMDB Bacterial resistance mechanisms
u-CARE Bacterial resistance mechanisms
VFDB Bacterial resistance mechanisms

 

BACTERIAL PATHOGENS
AMRFinderPlus A bioinformatic tool that allows users to identify antimicrobial resistance determinants, stress response, and virulence genes in bacterial genomes
Antimicrobial Drug Database (AMDD) An antimicrobial database
ARDB (no longer maintained) A database that tracks antibiotic resistance genes
ARGminer Antibiotic resistance database
BacMet Antibiotic resistance database
Beta-Lactamase Database (BLAD) Structural and phenotypic data on a class of enzymes, beta-lactamase.
Beta-Lactamase Database (BLDB) A database that documents beta-lactamase structure and function.
CBMAR A database focused on the annotation and discovery of novel beta-lactamase genes and proteins in bacteria.
EARS-Net A central and comprehensive database for the European Union that focuses on eight different bacterial pathogens
ESAC-Net A central and comprehensive database for the European Union that focuses on reference data on antimicrobial consumption by 30 countries across Europe.
FARME A database that compiles publicly available DNA elements and predicted proteins that confer antibiotic resistance, regulatory elements and mobile genetic elements.
INTEGRALL Annotated integrons and all other transposable elements that confer resistance to antibiotics in bacteria.
LacED A database that identifies and corrects inconsistencies in already existing databases, namely Beta-lactamases.
MEGARes A hand-curated antibiotic resistance database which incorporates previously published resistance sequences for antimicrobial drugs.
MUBII-TB-DB Highly structured, text-based database focusing on Mycobacterium tuberculosis
Mustard Database Tracks Antimicrobial Resistance Determinants (ARDs)
MvirDB A publicly available database that stores information on toxins, virulence factors and antibiotic resistance genes.
PathoPhenoDB Connects pathogens to their phenotypes
PATRIC database The bacterial bioinformatics resource center
RAC Repository of antibiotic resistance cassettes
ResFinder Antimicrobial resistance genes from whole-genome data sets
The Comprehensive Antibiotic Resistance Database Antibiotic resistance database
u-CARE A database focused on the documentation of multi-drug resistant Escherichia coli (E.coli)[
VFDB A database that provides scientist quick access to virulence factors in bacterial pathogens

 

BACTERIAL TAXONOMY AND BIODIVERSITY
BacDive Bacterial metadatabase that provides strain-linked information about bacterial and archaeal biodiversity, including taxonomy information
NCBI Taxonomy A taxonomic database operated by NCBI and concentrating on all taxa for which DNA sequences are available (those sequences are stored by GenBank, another database operated by NCBI).

 

MICROBIAL BIOCATALYTIC REACTIONS
The University of Minnesota Biocatalysis/Biodegradation Database Microbial biocatalytic reactions and biodegradation pathways primarily for xenobiotic, chemical compounds.