BIOLOGICAL PROCESSES |
|
| Biomodels Database | Published mathematical models describing biological processes |
BLAST AND SEQUENCE ALIGNMENT |
|
| European Bioinformatics Institute | Tools for bioinformatics. Web based Blast Fasta Clustal. |
| BLAST/BLAT | Search our genomes for your DNA or protein sequence |
| Blast | Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences |
| Sequence alignment | Align two or more protein sequences with the Clustal Omega program |
CELL LINES (HUMAN AND ANIMAL) |
|
| HyperCLDB | HyperCLDB is a hypetext devoted to availability of human and animal cell lines that are available from European collections.More than 4,000 cell lines are recorded.A free text search engine is as well available. |
| Cellosaurus | A knowledge resource on cell lines |
CELL SIGNALING |
|
| Cell Signaling Networks Database | Cell Signaling Networks Data base (CSNDB) is a data- and knowledge- base for signaling pathways of human cells. It compiles the information on biological molecules, sequences, structures, functions, and biological reactions which transfer the cellular signals. Signaling pathways are compiled as binary relationships of biomolecules and represented by graphs drawn automatically. |
EXOSOMES |
|
| ExoCarta | Database of exosomal proteins, RNA and lipids |
G PROTEINS |
|
| GCRDb | G-Protein Coupled Receptor Database. |
HYDROGENASE AND NITROGENASE |
|
| Hydrogenase&nitrogenase databases | Hydrogenase and nitrogenase databases. About 4000 references of hydrogen production studies. |
INTERACTION DATABASE |
|
| BioGRID | General repository for interaction datasets (Samuel Lunenfeld Research Institute) |
| BIOINFO BANK | Analysis of protein and protein-DNA interactions. |
| IntAct | Open-source database for molecular interactions (EMBL-EBI) |
| NCI-Nature Pathway Interaction Database | Interaction database |
METABOLOME |
|
| HMDB | Contains detailed information about small molecule metabolites found in the human body |
| Aging metabolomics | All metabolomes in body fluids in aging |
| Bmi metabolomics | Bmi metabolomic data |
| Disease metabolomics | Disease metabolomic data |
| Gender metabolomics | Gender metabolomic data |
| Geno metabolomics | Geno metabolomic data |
| Golm metabolomics | Golm metabolomic data |
| All metabolomes in body fluids | All body fluid metabolomic data |
| Metabolomic classes | Metabolomic classes data |
| Pharma metabolomics | Metabolomic pharma data |
| Pathway metabolomics | Metabolomic pathway data |
| Yeast metabolomics | Metabolomic yeast data |
| Diurnal metabolomics | Metabolomic diurnal data |
METAL BINDING SITE |
|
| Metalloprotein site Database and Browser | An structural database of metal-binding sites in metalloproteins, including an interactive search and visualization interface. |
METAL IONS |
|
| The PROMISE Database | The Prosthetic groups and Metal Ions in Protein Active Sites Database. |
MOLECULES |
|
| ConsensusPathDB | A molecular functional interaction database, integrating information from 12 other |
| Entrez | National Center for Biotechnology Information |
| Neuroscience Information Framework (University of California, San Diego) | Integrates hundreds of neuroscience relevant resources; many are listed below |
PATHWAYS |
|
| BioCyc Database Collection | Collection of thousands of Pathway/Genome Databases (PGDBs), and software tools for exploring them. |
| Reactome | Navigable map of human biological pathways, ranging from metabolic processes to hormonal signalling (Ontario Institute for Cancer Research, European Bioinformatics Institute, NYU Langone Medical Center, Cold Spring Harbor Laboratory) |
| WikiPathways | Pathways |
| BioCyc Database Collection | EcoCyc and MetaCyc are organism specific pathway/genome database |
| KEGG PATHWAY Database | Univ. of Kyoto pathway database |
| Reactome | Navigable map of human biological pathways, ranging from metabolic processes to hormonal signalling (Ontario Institute for Cancer Research, European Bioinformatics Institute, NYU Langone Medical Center, Cold Spring Harbor Laboratory) |
| WikiPathways | Pathways |
PEPTIDE |
|
| Peptide search | Find sequences that exactly match a query peptide sequence |
PORPHYRINS |
|
| Handbook of Porphyrin Science | Porphyrins, phthalocyanines, and their analogs and derivatives |
RIBOSOMES |
|
| Database of ribosomal crosslinks (DRC) | The Database of Ribosomal Cross-links (DRC) provides a complete collection of all the published data produced by cross-linking studies on the Escherichia coli ribosome, as well as on its components and functional ligands. |
SIGNAL TRANSDUCTION |
|
| Netpath | Curated resource of signal transduction pathways in humans |