DNA REPOSITORY |
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| DDBJ | DDBJ (DNA Data Bank of Japan) is the sole DNA data bank in Japan, which is officially certified to collect DNA sequences from researchers and to issue the internationally recognized accession number to data submitters. We collect data mainly from Japanese researchers, but of course accept data and issue the accession number to researchers in any other countries. |
DNA VARIATION |
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| PolymiRTS | A database of DNA variations in putative microRNA target sites |
NUCLEOTIDES |
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| GSDB | The Genome Sequence DataBase (GSDB) is a database of publicly available nucleotide sequences and their associated annotation maintained by NCGR. GSDB acquires most of its sequence data from the International Nucleotide Sequence Database Collaboration (IC, comprising DDBJ, EMBL, and GenBank databases) on a nightly basis. Each sequence record is parsed and stored in a relational database representation. |
| DNA Data Bank of Japan (National Institute of Genetics) | DNA databank |
| EMBL (European Bioinformatics Institute) | DNA databank |
| Ensembl |
provides automatic annotation databases for human, mouse, other vertebrate and eukaryote genomes |
| Ensembl Genomes |
provides genome-scale data for bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces (using the Ensembl software platform) |
| GenBank (National Center for Biotechnology Information) | DNA databank |
| 23andMe's |
A direct-to-consumer genetic testing service in which customers provide a saliva sample that is laboratory analysed, using single nucleotide polymorphism genotyping. |
| HapMap |
A haplotype map (HapMap) of the human genome |
| OMIM |
Online Mendelian Inheritance in Man of inherited diseases |
| RefSeq |
An open access, annotated and curated collection of publicly available nucleotide sequences (DNA, RNA) and their protein products. |
| 1000 Genomes Project |
The genomes of more than a thousand anonymous participants from a number of different ethnic groups were analyzed and made publicly available. |
| EggNOG Database |
A hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. It provides multiple sequence alignments and maximum-likelihood trees, as well as broad functional annotation. |
NUCLEOSOME |
| Nucleosome positioning region database | Nucleosome positioning |
SEQUENCE REPEATS |
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| BIOEXPLORER | The database of simple sequence repeats in the human genome |
| SSRD: A Simple Sequence Repeats Database of the Human Genome | The database of simple sequence repeats in the human genome(SSRD), is a comprehensive resource for information about Simple Sequence Repeats in the human genome. The 501 SSRs, contained in SSRD, are divided into k-mer repeats, where k ranges from one to six, i.e. monomer repeats to hexamer repeats. |
SNP |
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| SNPedia | Database of SNPs |