[Frontiers in Bioscience 14, 3145-3158, January 1, 2009]

Generation and management of excess histones during the cell cycle

Rakesh Kumar Singh, Johanna Paik, Akash Gunjan

Florida State University College of Medicine, Department of Biomedical Sciences, 1115 West Call Street, Tallahassee, FL 32306-4300, USA

TABLE OF CONTENTS

1. Abstract
2. Introduction: The need for regulating histone levels in cells
3. Sources of excess free histones
3.1. Multiple histone genes
3.2. Transcriptionally evicted histones
3.3. Histone accumulation upon replication arrest
3.4. Histone removal during DNA damage, repair and recombination
4. Strategies evolved by cells to deal with excess free histones 4.1. The role of DNA damage checkpoint kinases in the regulation of histone transcript levels in the budding yeast
4.2. Posttranslational regulation of histone protein levels through regulated proteolysis
4.3. Cell cycle responses to the presence of excess histones 5. Evolutionary conservation of mechanisms involved in histone regulation
6. Acknowledgements
7. References

1. ABSTRACT

Histones are essential proteins that package the DNA in all eukaryotes into chromosomes. However, histones can accumulate upon a decrease in DNA synthesis that occurs at the end of S-phase or following replication arrest. These positively charged histones can associate non-specifically with the negatively charged DNA and other cellular biomolecules, impairing their normal function. Hence, cells have evolved numerous strategies to limit the generation of excess histones and prevent deleterious effects due to their accumulation. Such strategies for histone regulation are discussed here, with particular emphasis on recent studies that implicate the DNA damage checkpoint kinases in the regulation of histone levels, especially in response to replication inhibition. We have also focused upon the recently discovered regulatory mechanism involving histone proteolysis in the budding yeast. Additionally, we speculate that cells may possess a surveillance mechanism for sensing histone levels, particularly in the G1 and S-phases of the cell cycle. Proper regulation of histone levels has major implications for the maintenance of epigenetic marks on chromatin, genomic stability and the packaging of sperm DNA.